J5_1K8A_001
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGAUGAAG*CGAAUG*CU*ACAA*UGA
- Length
- 23 nucleotides
- Bulged bases
- 1K8A|1|A|U|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1K8A_001 not in the Motif Atlas
- Homologous match to J5_4V9F_001
- Geometric discrepancy: 0.0324
- The information below is about J5_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99180.1
- Basepair signature
- cWW-F-F-cHW-cWW-tSH-tHH-F-tHS-F-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1K8A|1|A|U|43
1K8A|1|A|G|44
1K8A|1|A|A|45
1K8A|1|A|U|46
1K8A|1|A|G|47
1K8A|1|A|A|48
1K8A|1|A|A|49
1K8A|1|A|G|50
*
1K8A|1|A|C|111
1K8A|1|A|G|112
1K8A|1|A|A|113
1K8A|1|A|A|114
1K8A|1|A|U|115
1K8A|1|A|G|116
*
1K8A|1|A|C|124
1K8A|1|A|U|125
*
1K8A|1|A|A|129
1K8A|1|A|C|130
1K8A|1|A|A|131
1K8A|1|A|A|132
*
1K8A|1|A|U|146
1K8A|1|A|G|147
1K8A|1|A|A|148
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain N
- RIBOSOMAL PROTEIN L15E
- Chain T
- RIBOSOMAL PROTEIN L23
Coloring options: