J5_1KD1_004
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAG*CACAG*CGAC*GC*GGGAG
- Length
- 20 nucleotides
- Bulged bases
- 1KD1|1|A|G|745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1KD1_004 not in the Motif Atlas
- Homologous match to J5_4V9F_004
- Geometric discrepancy: 0.0241
- The information below is about J5_4V9F_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43592.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
1KD1|1|A|C|658
1KD1|1|A|A|659
1KD1|1|A|A|660
1KD1|1|A|G|661
*
1KD1|1|A|C|685
1KD1|1|A|A|686
1KD1|1|A|C|687
1KD1|1|A|A|688
1KD1|1|A|G|689
*
1KD1|1|A|C|696
1KD1|1|A|G|697
1KD1|1|A|A|698
1KD1|1|A|C|699
*
1KD1|1|A|G|727
1KD1|1|A|C|728
*
1KD1|1|A|G|743
1KD1|1|A|G|744
1KD1|1|A|G|745
1KD1|1|A|A|746
1KD1|1|A|G|747
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain P
- RIBOSOMAL PROTEIN L18E
Coloring options: