J5_1KD1_008
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 1KD1|1|A|U|2117, 1KD1|1|A|A|2465, 1KD1|1|A|G|2466, 1KD1|1|A|A|2467, 1KD1|1|A|A|2468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1KD1_008 not in the Motif Atlas
- Homologous match to J5_4V9F_008
- Geometric discrepancy: 0.0431
- The information below is about J5_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
1KD1|1|A|U|2115
1KD1|1|A|U|2116
1KD1|1|A|U|2117
1KD1|1|A|A|2118
*
1KD1|1|A|U|2276
1KD1|1|A|U|2277
1KD1|1|A|U|2278
1KD1|1|A|G|2279
*
1KD1|1|A|C|2292
1KD1|1|A|G|2293
*
1KD1|1|A|C|2315
1KD1|1|A|G|2316
*
1KD1|1|A|C|2464
1KD1|1|A|A|2465
1KD1|1|A|G|2466
1KD1|1|A|A|2467
1KD1|1|A|A|2468
1KD1|1|A|A|2469
1KD1|1|A|A|2470
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 4
- RIBOSOMAL PROTEIN L44E
- Chain C
- RIBOSOMAL PROTEIN L2
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain N
- RIBOSOMAL PROTEIN L15E
- Chain R
- RIBOSOMAL PROTEIN L21E
Coloring options: