J5_1KQS_004
3D structure
- PDB id
- 1KQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CACAG*CGAC*GC*GGGAG
- Length
- 20 nucleotides
- Bulged bases
- 1KQS|1|0|G|745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1KQS_004 not in the Motif Atlas
- Homologous match to J5_4V9F_004
- Geometric discrepancy: 0.0246
- The information below is about J5_4V9F_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43592.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
1KQS|1|0|C|658
1KQS|1|0|A|659
1KQS|1|0|A|660
1KQS|1|0|G|661
*
1KQS|1|0|C|685
1KQS|1|0|A|686
1KQS|1|0|C|687
1KQS|1|0|A|688
1KQS|1|0|G|689
*
1KQS|1|0|C|696
1KQS|1|0|G|697
1KQS|1|0|A|698
1KQS|1|0|C|699
*
1KQS|1|0|G|727
1KQS|1|0|C|728
*
1KQS|1|0|G|743
1KQS|1|0|G|744
1KQS|1|0|G|745
1KQS|1|0|A|746
1KQS|1|0|G|747
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN L4
- Chain K
- RIBOSOMAL PROTEIN L15
- Chain N
- RIBOSOMAL PROTEIN L18E
Coloring options: