J5_1KQS_006

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1KQS|1|0|G|1814, 1KQS|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1KQS_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0298

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

1KQS|1|0|G|1752
1KQS|1|0|C|1753
1KQS|1|0|A|1754
1KQS|1|0|A|1755
1KQS|1|0|G|1756
1KQS|1|0|U|1757
1KQS|1|0|U|1758
1KQS|1|0|A|1759
1KQS|1|0|G|1760
*
1KQS|1|0|U|1784
1KQS|1|0|G|1785
*
1KQS|1|0|U|1807
1KQS|1|0|C|1808
*
1KQS|1|0|G|1812
1KQS|1|0|U|1813
1KQS|1|0|G|1814
1KQS|1|0|A|1815
1KQS|1|0|C|1816
1KQS|1|0|U|1817
1KQS|1|0|C|1818
1KQS|1|0|G|1819
1KQS|1|0|G|1820
*
1KQS|1|0|C|2029
1KQS|1|0|A|2030
1KQS|1|0|C|2031

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain J

RIBOSOMAL PROTEIN L14

Chain O

RIBOSOMAL PROTEIN L19E