J5_1N33_001
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1N33_001 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0757
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
1N33|1|A|C|36
1N33|1|A|U|37
1N33|1|A|G|38
1N33|1|A|G|39
*
1N33|1|A|C|403
1N33|1|A|U|404
1N33|1|A|U|405
1N33|1|A|G|406
*
1N33|1|A|C|436
1N33|1|A|U|437
1N33|1|A|G|438
1N33|1|A|A|439
1N33|1|A|A|440
1N33|1|A|C|442
*
1N33|1|A|G|492
1N33|1|A|G|494
1N33|1|A|U|495
1N33|1|A|A|496
1N33|1|A|A|497
1N33|1|A|U|498
1N33|1|A|A|499
1N33|1|A|G|500
*
1N33|1|A|C|545
1N33|1|A|G|546
1N33|1|A|A|547
1N33|1|A|G|548
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain D
- 30S RIBOSOMAL PROTEIN S4
- Chain L
- 30S RIBOSOMAL PROTEIN S12
Coloring options: