J5_1N36_002

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CAUGCAAG*CGGACGGG*CAG*CAC*GGCAGCAG

Length

30 nucleotides

Bulged bases

1N36|1|A|C|58

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1N36|1|A|C|54
1N36|1|A|A|55
1N36|1|A|U|56
1N36|1|A|G|57
1N36|1|A|C|58
1N36|1|A|A|59
1N36|1|A|A|60
1N36|1|A|G|61
*
1N36|1|A|C|106
1N36|1|A|G|107
1N36|1|A|G|108
1N36|1|A|A|109
1N36|1|A|C|110
1N36|1|A|G|111
1N36|1|A|G|112
1N36|1|A|G|113
*
1N36|1|A|C|314
1N36|1|A|A|315
1N36|1|A|G|316
*
1N36|1|A|C|337
1N36|1|A|A|338
1N36|1|A|C|339
*
1N36|1|A|G|350
1N36|1|A|G|351
1N36|1|A|C|352
1N36|1|A|A|353
1N36|1|A|G|354
1N36|1|A|C|355
1N36|1|A|A|356
1N36|1|A|G|357

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20