J5_1N8R_004
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAG*CACAG*CGAC*GC*GGGAG
- Length
- 20 nucleotides
- Bulged bases
- 1N8R|1|A|G|745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1N8R_004 not in the Motif Atlas
- Homologous match to J5_4V9F_004
- Geometric discrepancy: 0.0246
- The information below is about J5_4V9F_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43592.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
1N8R|1|A|C|658
1N8R|1|A|A|659
1N8R|1|A|A|660
1N8R|1|A|G|661
*
1N8R|1|A|C|685
1N8R|1|A|A|686
1N8R|1|A|C|687
1N8R|1|A|A|688
1N8R|1|A|G|689
*
1N8R|1|A|C|696
1N8R|1|A|G|697
1N8R|1|A|A|698
1N8R|1|A|C|699
*
1N8R|1|A|G|727
1N8R|1|A|C|728
*
1N8R|1|A|G|743
1N8R|1|A|G|744
1N8R|1|A|G|745
1N8R|1|A|A|746
1N8R|1|A|G|747
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4E
- Chain M
- 50S ribosomal protein L15P
- Chain P
- 50S ribosomal protein L18E
Coloring options: