J5_1N8R_006
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCAAGUUAG*UG*UC*GUGACUCGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 1N8R|1|A|G|1814, 1N8R|1|A|G|1819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1N8R_006 not in the Motif Atlas
- Homologous match to J5_4V9F_006
- Geometric discrepancy: 0.0303
- The information below is about J5_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
1N8R|1|A|G|1752
1N8R|1|A|C|1753
1N8R|1|A|A|1754
1N8R|1|A|A|1755
1N8R|1|A|G|1756
1N8R|1|A|U|1757
1N8R|1|A|U|1758
1N8R|1|A|A|1759
1N8R|1|A|G|1760
*
1N8R|1|A|U|1784
1N8R|1|A|G|1785
*
1N8R|1|A|U|1807
1N8R|1|A|C|1808
*
1N8R|1|A|G|1812
1N8R|1|A|U|1813
1N8R|1|A|G|1814
1N8R|1|A|A|1815
1N8R|1|A|C|1816
1N8R|1|A|U|1817
1N8R|1|A|C|1818
1N8R|1|A|G|1819
1N8R|1|A|G|1820
*
1N8R|1|A|C|2029
1N8R|1|A|A|2030
1N8R|1|A|C|2031
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3P
- Chain L
- 50S ribosomal protein L14P
- Chain Q
- 50S ribosomal protein L19E
Coloring options: