J5_1NJM_005

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

1NJM|1|0|U|49, 1NJM|1|0|G|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1NJM_005 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.3376

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1NJM|1|0|C|46
1NJM|1|0|G|47
1NJM|1|0|A|48
1NJM|1|0|U|49
1NJM|1|0|G|50
1NJM|1|0|A|51
1NJM|1|0|A|52
1NJM|1|0|G|53
*
1NJM|1|0|C|114
1NJM|1|0|G|115
1NJM|1|0|A|116
1NJM|1|0|A|117
1NJM|1|0|U|118
1NJM|1|0|G|119
*
1NJM|1|0|C|128
1NJM|1|0|A|129
*
1NJM|1|0|U|142
1NJM|1|0|A|143
*
1NJM|1|0|U|154
1NJM|1|0|G|155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains