J5_1NJP_005

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

1NJP|1|0|U|49, 1NJP|1|0|G|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1NJP_005 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.3389

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1NJP|1|0|C|46
1NJP|1|0|G|47
1NJP|1|0|A|48
1NJP|1|0|U|49
1NJP|1|0|G|50
1NJP|1|0|A|51
1NJP|1|0|A|52
1NJP|1|0|G|53
*
1NJP|1|0|C|114
1NJP|1|0|G|115
1NJP|1|0|A|116
1NJP|1|0|A|117
1NJP|1|0|U|118
1NJP|1|0|G|119
*
1NJP|1|0|C|128
1NJP|1|0|A|129
*
1NJP|1|0|U|142
1NJP|1|0|A|143
*
1NJP|1|0|U|154
1NJP|1|0|G|155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains