J5_1NKW_003

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAUCUCACC*GGUC*GC*GUGAAUAGG*CGC

Length

29 nucleotides

Bulged bases

1NKW|1|0|G|1749, 1NKW|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NKW|1|0|G|1691
1NKW|1|0|C|1692
1NKW|1|0|A|1693
1NKW|1|0|A|1694
1NKW|1|0|U|1695
1NKW|1|0|C|1696
1NKW|1|0|U|1697
1NKW|1|0|C|1698
1NKW|1|0|A|1699
1NKW|1|0|C|1700
1NKW|1|0|C|1701
*
1NKW|1|0|G|1721
1NKW|1|0|G|1722
1NKW|1|0|U|1723
1NKW|1|0|C|1724
*
1NKW|1|0|G|1742
1NKW|1|0|C|1743
*
1NKW|1|0|G|1747
1NKW|1|0|U|1748
1NKW|1|0|G|1749
1NKW|1|0|A|1750
1NKW|1|0|A|1751
1NKW|1|0|U|1752
1NKW|1|0|A|1753
1NKW|1|0|G|1754
1NKW|1|0|G|1755
*
1NKW|1|0|C|1971
1NKW|1|0|G|1972
1NKW|1|0|C|1973

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L14

Chain N

50S ribosomal protein L19