Loop J5_1NKW

3D structure

PDB id: 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: ACGAAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCUCUAU
Length: 44 nucleotides
Bulged bases: 1NKW|1|0|C|2038, 1NKW|1|0|A|2045, 1NKW|1|0|A|2427, 1NKW|1|0|U|2428, 1NKW|1|0|G|2484, 1NKW|1|0|U|2564, 1NKW|1|0|U|2588, 1NKW|1|0|C|2589, 1NKW|1|0|A|2593
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1NKW|1|0|A|2037
1NKW|1|0|C|2038
1NKW|1|0|G|2039
1NKW|1|0|A|2040
1NKW|1|0|A|2041
1NKW|1|0|A|2042
1NKW|1|0|A|2043
1NKW|1|0|G|2044
1NKW|1|0|A|2045
1NKW|1|0|C|2046
1NKW|1|0|C|2047
*
1NKW|1|0|G|2425
1NKW|1|0|G|2426
1NKW|1|0|A|2427
1NKW|1|0|U|2428
1NKW|1|0|A|2429
1NKW|1|0|A|2430
1NKW|1|0|C|2431
1NKW|1|0|A|2432
*
1NKW|1|0|U|2479
1NKW|1|0|C|2480
1NKW|1|0|G|2481
1NKW|1|0|A|2482
1NKW|1|0|U|2483
1NKW|1|0|G|2484
1NKW|1|0|U|2485
1NKW|1|0|C|2486
*
1NKW|1|0|G|2561
1NKW|1|0|G|2562
1NKW|1|0|U|2563
1NKW|1|0|U|2564
1NKW|1|0|C|2565
1NKW|1|0|A|2566
1NKW|1|0|G|2567
*
1NKW|1|0|C|2585
1NKW|1|0|G|2586
1NKW|1|0|G|2587
1NKW|1|0|U|2588
1NKW|1|0|C|2589
1NKW|1|0|U|2590
1NKW|1|0|C|2591
1NKW|1|0|U|2592
1NKW|1|0|A|2593
1NKW|1|0|U|2594

Current chains

Chain 0: 23S ribosomal RNA

Nearby chains

Chain A: 50S ribosomal protein L2
Chain B: 50S ribosomal protein L3
Chain C: 50S ribosomal protein L4
Chain Z: 50S ribosomal protein L32

J5_1NKW_004