J5_1NKW_005
3D structure
- PDB id
- 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGGAUG
- Length
- 23 nucleotides
- Bulged bases
- 1NKW|1|0|U|1268
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1NKW_005 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1854
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
1NKW|1|0|C|593
1NKW|1|0|G|594
1NKW|1|0|A|595
1NKW|1|0|C|596
1NKW|1|0|U|597
1NKW|1|0|U|598
*
1NKW|1|0|A|681
1NKW|1|0|G|682
1NKW|1|0|A|683
1NKW|1|0|C|684
*
1NKW|1|0|G|822
1NKW|1|0|U|823
1NKW|1|0|U|824
1NKW|1|0|C|825
*
1NKW|1|0|G|1209
1NKW|1|0|C|1210
*
1NKW|1|0|G|1263
1NKW|1|0|C|1264
1NKW|1|0|G|1265
1NKW|1|0|G|1266
1NKW|1|0|A|1267
1NKW|1|0|U|1268
1NKW|1|0|G|1269
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
- Chain O
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L21
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