J5_1NWY_003

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAUCUCACC*GGUC*GC*GUGAAUAGG*CGC

Length

29 nucleotides

Bulged bases

1NWY|1|0|G|1749, 1NWY|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NWY|1|0|G|1691
1NWY|1|0|C|1692
1NWY|1|0|A|1693
1NWY|1|0|A|1694
1NWY|1|0|U|1695
1NWY|1|0|C|1696
1NWY|1|0|U|1697
1NWY|1|0|C|1698
1NWY|1|0|A|1699
1NWY|1|0|C|1700
1NWY|1|0|C|1701
*
1NWY|1|0|G|1721
1NWY|1|0|G|1722
1NWY|1|0|U|1723
1NWY|1|0|C|1724
*
1NWY|1|0|G|1742
1NWY|1|0|C|1743
*
1NWY|1|0|G|1747
1NWY|1|0|U|1748
1NWY|1|0|G|1749
1NWY|1|0|A|1750
1NWY|1|0|A|1751
1NWY|1|0|U|1752
1NWY|1|0|A|1753
1NWY|1|0|G|1754
1NWY|1|0|G|1755
*
1NWY|1|0|C|1971
1NWY|1|0|G|1972
1NWY|1|0|C|1973

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain B

ribosomal protein L3

Chain I

ribosomal protein L14

Chain N

ribosomal protein L19