Loop J5_1NWY

3D structure

PDB id: 1NWY (explore in PDB, NAKB, or RNA 3D Hub)
Description: COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: AAAAGACCC*GGGAUAACA*UCGAUGUCG*UGGGUUCAG*CGGUCU
Length: 42 nucleotides
Bulged bases: 1NWY|1|0|A|2045, 1NWY|1|0|A|2427, 1NWY|1|0|G|2484, 1NWY|1|0|G|2560, 1NWY|1|0|C|2565, 1NWY|1|0|A|2566, 1NWY|1|0|U|2588, 1NWY|1|0|C|2589
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1NWY|1|0|A|2040
1NWY|1|0|A|2041
1NWY|1|0|A|2042
1NWY|1|0|A|2043
1NWY|1|0|G|2044
1NWY|1|0|A|2045
1NWY|1|0|C|2046
1NWY|1|0|C|2047
1NWY|1|0|C|2048
*
1NWY|1|0|G|2424
1NWY|1|0|G|2425
1NWY|1|0|G|2426
1NWY|1|0|A|2427
1NWY|1|0|U|2428
1NWY|1|0|A|2429
1NWY|1|0|A|2430
1NWY|1|0|C|2431
1NWY|1|0|A|2432
*
1NWY|1|0|U|2479
1NWY|1|0|C|2480
1NWY|1|0|G|2481
1NWY|1|0|A|2482
1NWY|1|0|U|2483
1NWY|1|0|G|2484
1NWY|1|0|U|2485
1NWY|1|0|C|2486
1NWY|1|0|G|2487
*
1NWY|1|0|U|2559
1NWY|1|0|G|2560
1NWY|1|0|G|2561
1NWY|1|0|G|2562
1NWY|1|0|U|2563
1NWY|1|0|U|2564
1NWY|1|0|C|2565
1NWY|1|0|A|2566
1NWY|1|0|G|2567
*
1NWY|1|0|C|2585
1NWY|1|0|G|2586
1NWY|1|0|G|2587
1NWY|1|0|U|2588
1NWY|1|0|C|2589
1NWY|1|0|U|2590

Current chains

Chain 0: 23S RIBOSOMAL RRNA

Nearby chains

Chain A: ribosomal protein L2
Chain B: ribosomal protein L3
Chain C: ribosomal protein L4
Chain Z: ribosomal protein L32

J5_1NWY_004