J5_1OND_001

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AUG

Length

22 nucleotides

Bulged bases

1OND|1|0|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1OND_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.3024

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1OND|1|0|C|46
1OND|1|0|G|47
1OND|1|0|A|48
1OND|1|0|U|49
1OND|1|0|G|50
1OND|1|0|A|51
1OND|1|0|A|52
1OND|1|0|G|53
*
1OND|1|0|C|114
1OND|1|0|G|115
1OND|1|0|A|116
1OND|1|0|A|117
1OND|1|0|U|118
1OND|1|0|G|119
*
1OND|1|0|C|128
1OND|1|0|A|129
*
1OND|1|0|U|142
1OND|1|0|A|143
1OND|1|0|U|144
*
1OND|1|0|A|153
1OND|1|0|U|154
1OND|1|0|G|155

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains