J5_1Q7Y_006
3D structure
- PDB id
- 1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAAGUUAG*UG*UC*GUGACUCGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 1Q7Y|1|A|G|1814, 1Q7Y|1|A|G|1819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1Q7Y_006 not in the Motif Atlas
- Homologous match to J5_4V9F_006
- Geometric discrepancy: 0.0407
- The information below is about J5_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
1Q7Y|1|A|G|1752
1Q7Y|1|A|C|1753
1Q7Y|1|A|A|1754
1Q7Y|1|A|A|1755
1Q7Y|1|A|G|1756
1Q7Y|1|A|U|1757
1Q7Y|1|A|U|1758
1Q7Y|1|A|A|1759
1Q7Y|1|A|G|1760
*
1Q7Y|1|A|U|1784
1Q7Y|1|A|G|1785
*
1Q7Y|1|A|U|1807
1Q7Y|1|A|C|1808
*
1Q7Y|1|A|G|1812
1Q7Y|1|A|U|1813
1Q7Y|1|A|G|1814
1Q7Y|1|A|A|1815
1Q7Y|1|A|C|1816
1Q7Y|1|A|U|1817
1Q7Y|1|A|C|1818
1Q7Y|1|A|G|1819
1Q7Y|1|A|G|1820
*
1Q7Y|1|A|C|2029
1Q7Y|1|A|A|2030
1Q7Y|1|A|C|2031
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain D
- 50S ribosomal protein L3P
- Chain L
- 50S ribosomal protein L14P
- Chain Q
- 50S ribosomal protein L19E
Coloring options: