3D structure

PDB id
1Q81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CAGAAAA
Length
19 nucleotides
Bulged bases
1Q81|1|A|U|2117, 1Q81|1|A|A|2465, 1Q81|1|A|G|2466, 1Q81|1|A|A|2467, 1Q81|1|A|A|2468
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_1Q81_008 not in the Motif Atlas
Homologous match to J5_4V9F_008
Geometric discrepancy: 0.0543
The information below is about J5_4V9F_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_08912.1
Basepair signature
cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

1Q81|1|A|U|2115
1Q81|1|A|U|2116
1Q81|1|A|U|2117
1Q81|1|A|A|2118
*
1Q81|1|A|U|2276
1Q81|1|A|U|2277
1Q81|1|A|U|2278
1Q81|1|A|G|2279
*
1Q81|1|A|C|2292
1Q81|1|A|G|2293
*
1Q81|1|A|C|2315
1Q81|1|A|G|2316
*
1Q81|1|A|C|2464
1Q81|1|A|A|2465
1Q81|1|A|G|2466
1Q81|1|A|A|2467
1Q81|1|A|A|2468
1Q81|1|A|A|2469
1Q81|1|A|A|2470

Current chains

Chain A
23S ribosomal rna

Nearby chains

Chain 4
50S ribosomal protein L44E
Chain C
50S ribosomal protein L2P
Chain M
50S ribosomal protein L15P
Chain N
L15 Ribosomal Protein
Chain R
50S ribosomal protein L21e

Coloring options:


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