J5_1Q86_006

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1Q86|1|A|G|1814, 1Q86|1|A|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1Q86_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0361

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1Q86|1|A|G|1752
1Q86|1|A|C|1753
1Q86|1|A|A|1754
1Q86|1|A|A|1755
1Q86|1|A|G|1756
1Q86|1|A|U|1757
1Q86|1|A|U|1758
1Q86|1|A|A|1759
1Q86|1|A|G|1760
*
1Q86|1|A|U|1784
1Q86|1|A|G|1785
*
1Q86|1|A|U|1807
1Q86|1|A|C|1808
*
1Q86|1|A|G|1812
1Q86|1|A|U|1813
1Q86|1|A|G|1814
1Q86|1|A|A|1815
1Q86|1|A|C|1816
1Q86|1|A|U|1817
1Q86|1|A|C|1818
1Q86|1|A|G|1819
1Q86|1|A|G|1820
*
1Q86|1|A|C|2029
1Q86|1|A|A|2030
1Q86|1|A|C|2031

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain D

50S ribosomal protein L3P

Chain L

50S ribosomal protein L14P

Chain Q

50S ribosomal protein L19E