J5_1QVF_004

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CACAG*CGAC*GC*GGGAG

Length

20 nucleotides

Bulged bases

1QVF|1|0|G|745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1QVF_004 not in the Motif Atlas

Homologous match to J5_4V9F_004

Geometric discrepancy: 0.019

The information below is about J5_4V9F_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_87582.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-F-F-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|C|658
1QVF|1|0|A|659
1QVF|1|0|A|660
1QVF|1|0|G|661
*
1QVF|1|0|C|685
1QVF|1|0|A|686
1QVF|1|0|C|687
1QVF|1|0|A|688
1QVF|1|0|G|689
*
1QVF|1|0|C|696
1QVF|1|0|G|697
1QVF|1|0|A|698
1QVF|1|0|C|699
*
1QVF|1|0|G|727
1QVF|1|0|C|728
*
1QVF|1|0|G|743
1QVF|1|0|G|744
1QVF|1|0|G|745
1QVF|1|0|A|746
1QVF|1|0|G|747

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain K

50S ribosomal protein L15P

Chain N

50S ribosomal protein L18e