J5_1QVG_006

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1QVG|1|0|G|1814, 1QVG|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1QVG_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.036

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1QVG|1|0|G|1752
1QVG|1|0|C|1753
1QVG|1|0|A|1754
1QVG|1|0|A|1755
1QVG|1|0|G|1756
1QVG|1|0|U|1757
1QVG|1|0|U|1758
1QVG|1|0|A|1759
1QVG|1|0|G|1760
*
1QVG|1|0|U|1784
1QVG|1|0|G|1785
*
1QVG|1|0|U|1807
1QVG|1|0|C|1808
*
1QVG|1|0|G|1812
1QVG|1|0|U|1813
1QVG|1|0|G|1814
1QVG|1|0|A|1815
1QVG|1|0|C|1816
1QVG|1|0|U|1817
1QVG|1|0|C|1818
1QVG|1|0|G|1819
1QVG|1|0|G|1820
*
1QVG|1|0|C|2029
1QVG|1|0|A|2030
1QVG|1|0|C|2031

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L14P

Chain O

50S ribosomal protein L19E