J5_1S72_006

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1S72|1|0|G|1814, 1S72|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1S72_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0228

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1S72|1|0|G|1752
1S72|1|0|C|1753
1S72|1|0|A|1754
1S72|1|0|A|1755
1S72|1|0|G|1756
1S72|1|0|U|1757
1S72|1|0|U|1758
1S72|1|0|A|1759
1S72|1|0|G|1760
*
1S72|1|0|U|1784
1S72|1|0|G|1785
*
1S72|1|0|U|1807
1S72|1|0|C|1808
*
1S72|1|0|G|1812
1S72|1|0|U|1813
1S72|1|0|G|1814
1S72|1|0|A|1815
1S72|1|0|C|1816
1S72|1|0|U|1817
1S72|1|0|C|1818
1S72|1|0|G|1819
1S72|1|0|G|1820
*
1S72|1|0|C|2029
1S72|1|0|A|2030
1S72|1|0|C|2031

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19E