J5_1VQ5_001
3D structure
- PDB id
- 1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAUGAAG*CGAAUG*CU*ACAA*UGA
- Length
- 23 nucleotides
- Bulged bases
- 1VQ5|1|0|U|46, 1VQ5|1|0|C|130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VQ5_001 not in the Motif Atlas
- Homologous match to J5_4V9F_001
- Geometric discrepancy: 0.0355
- The information below is about J5_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99180.1
- Basepair signature
- cWW-F-F-cHW-cWW-tSH-tHH-F-tHS-F-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQ5|1|0|U|43
1VQ5|1|0|G|44
1VQ5|1|0|A|45
1VQ5|1|0|U|46
1VQ5|1|0|G|47
1VQ5|1|0|A|48
1VQ5|1|0|A|49
1VQ5|1|0|G|50
*
1VQ5|1|0|C|111
1VQ5|1|0|G|112
1VQ5|1|0|A|113
1VQ5|1|0|A|114
1VQ5|1|0|U|115
1VQ5|1|0|G|116
*
1VQ5|1|0|C|124
1VQ5|1|0|U|125
*
1VQ5|1|0|A|129
1VQ5|1|0|C|130
1VQ5|1|0|A|131
1VQ5|1|0|A|132
*
1VQ5|1|0|U|146
1VQ5|1|0|G|147
1VQ5|1|0|A|148
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain M
- 50S Ribosomal Protein L15E
- Chain S
- 50S ribosomal protein L23P
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