J5_1VQ7_006

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1VQ7|1|0|G|1814, 1VQ7|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1VQ7_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0297

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1VQ7|1|0|G|1752
1VQ7|1|0|C|1753
1VQ7|1|0|A|1754
1VQ7|1|0|A|1755
1VQ7|1|0|G|1756
1VQ7|1|0|U|1757
1VQ7|1|0|U|1758
1VQ7|1|0|A|1759
1VQ7|1|0|G|1760
*
1VQ7|1|0|U|1784
1VQ7|1|0|G|1785
*
1VQ7|1|0|U|1807
1VQ7|1|0|C|1808
*
1VQ7|1|0|G|1812
1VQ7|1|0|U|1813
1VQ7|1|0|G|1814
1VQ7|1|0|A|1815
1VQ7|1|0|C|1816
1VQ7|1|0|U|1817
1VQ7|1|0|C|1818
1VQ7|1|0|G|1819
1VQ7|1|0|G|1820
*
1VQ7|1|0|C|2029
1VQ7|1|0|A|2030
1VQ7|1|0|C|2031

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19E