J5_1VQK_005
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CAAG*CACAG*CGACAUG*CGC*GGGAG
- Length
- 24 nucleotides
- Bulged bases
- 1VQK|1|0|A|700, 1VQK|1|0|G|745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VQK_005 not in the Motif Atlas
- Homologous match to J5_4V9F_005
- Geometric discrepancy: 0.0365
- The information below is about J5_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63867.1
- Basepair signature
- cWW-F-F-F-F-cWW-cHW-cWW-F-F-cWW-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
1VQK|1|0|C|658
1VQK|1|0|A|659
1VQK|1|0|A|660
1VQK|1|0|G|661
*
1VQK|1|0|C|685
1VQK|1|0|A|686
1VQK|1|0|C|687
1VQK|1|0|A|688
1VQK|1|0|G|689
*
1VQK|1|0|C|696
1VQK|1|0|G|697
1VQK|1|0|A|698
1VQK|1|0|C|699
1VQK|1|0|A|700
1VQK|1|0|U|701
1VQK|1|0|G|702
*
1VQK|1|0|C|726
1VQK|1|0|G|727
1VQK|1|0|C|728
*
1VQK|1|0|G|743
1VQK|1|0|G|744
1VQK|1|0|G|745
1VQK|1|0|A|746
1VQK|1|0|G|747
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain L
- 50S ribosomal protein L15P
- Chain O
- 50S ribosomal protein L18e
Coloring options: