J5_1VQN_006

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1VQN|1|0|G|1814, 1VQN|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1VQN_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0448

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

1VQN|1|0|G|1752
1VQN|1|0|C|1753
1VQN|1|0|A|1754
1VQN|1|0|A|1755
1VQN|1|0|G|1756
1VQN|1|0|U|1757
1VQN|1|0|U|1758
1VQN|1|0|A|1759
1VQN|1|0|G|1760
*
1VQN|1|0|U|1784
1VQN|1|0|G|1785
*
1VQN|1|0|U|1807
1VQN|1|0|C|1808
*
1VQN|1|0|G|1812
1VQN|1|0|U|1813
1VQN|1|0|G|1814
1VQN|1|0|A|1815
1VQN|1|0|C|1816
1VQN|1|0|U|1817
1VQN|1|0|C|1818
1VQN|1|0|G|1819
1VQN|1|0|G|1820
*
1VQN|1|0|C|2029
1VQN|1|0|A|2030
1VQN|1|0|C|2031

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19E