J5_1VQO_006

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1VQO|1|0|G|1814, 1VQO|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1VQO_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0449

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1VQO|1|0|G|1752
1VQO|1|0|C|1753
1VQO|1|0|A|1754
1VQO|1|0|A|1755
1VQO|1|0|G|1756
1VQO|1|0|U|1757
1VQO|1|0|U|1758
1VQO|1|0|A|1759
1VQO|1|0|G|1760
*
1VQO|1|0|U|1784
1VQO|1|0|G|1785
*
1VQO|1|0|U|1807
1VQO|1|0|C|1808
*
1VQO|1|0|G|1812
1VQO|1|0|U|1813
1VQO|1|0|G|1814
1VQO|1|0|A|1815
1VQO|1|0|C|1816
1VQO|1|0|U|1817
1VQO|1|0|C|1818
1VQO|1|0|G|1819
1VQO|1|0|G|1820
*
1VQO|1|0|C|2029
1VQO|1|0|A|2030
1VQO|1|0|C|2031

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19E