J5_1VVJ_011

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1VVJ_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0917

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1VVJ|1|XA|C|36
1VVJ|1|XA|U|37
1VVJ|1|XA|G|38
1VVJ|1|XA|G|39
*
1VVJ|1|XA|C|403
1VVJ|1|XA|U|404
1VVJ|1|XA|U|405
1VVJ|1|XA|G|406
*
1VVJ|1|XA|C|436
1VVJ|1|XA|U|437
1VVJ|1|XA|G|438
1VVJ|1|XA|A|439
1VVJ|1|XA|A|440
1VVJ|1|XA|C|442
*
1VVJ|1|XA|G|492
1VVJ|1|XA|G|493
1VVJ|1|XA|U|494
1VVJ|1|XA|A|495
1VVJ|1|XA|A|496
1VVJ|1|XA|U|497
1VVJ|1|XA|A|498
1VVJ|1|XA|G|500
*
1VVJ|1|XA|C|545
1VVJ|1|XA|G|546
1VVJ|1|XA|A|547
1VVJ|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12