J5_1VW3_003
3D structure
- PDB id
- 1VW3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUU*AU*AG*CGAAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 1VW3|1|A|U|1976, 1VW3|1|A|G|2694, 1VW3|1|A|A|2695, 1VW3|1|A|A|2696, 1VW3|1|A|U|2697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VW3_003 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1075
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
1VW3|1|A|U|1974
1VW3|1|A|U|1975
1VW3|1|A|U|1976
1VW3|1|A|A|1977
*
1VW3|1|A|U|2269
1VW3|1|A|U|2270
1VW3|1|A|U|2271
1VW3|1|A|U|2272
*
1VW3|1|A|A|2284
1VW3|1|A|U|2285
*
1VW3|1|A|A|2308
1VW3|1|A|G|2309
*
1VW3|1|A|C|2693
1VW3|1|A|G|2694
1VW3|1|A|A|2695
1VW3|1|A|A|2696
1VW3|1|A|U|2697
1VW3|1|A|A|2698
1VW3|1|A|A|2699
1VW3|1|A|A|2700
1VW3|1|A|A|2701
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain B
- 54S ribosomal protein RML2, mitochondrial
Coloring options: