J5_1VWW_001

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAGCG*CGUACG*CGGAGUCG*CAAAGCG*UAAG

Length

31 nucleotides

Bulged bases

1VWW|1|5|G|156, 1VWW|1|5|C|159, 1VWW|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|C|111
1VWW|1|5|C|112
1VWW|1|5|A|113
1VWW|1|5|G|114
1VWW|1|5|C|115
1VWW|1|5|G|116
*
1VWW|1|5|C|155
1VWW|1|5|G|156
1VWW|1|5|U|157
1VWW|1|5|A|158
1VWW|1|5|C|159
1VWW|1|5|G|160
*
1VWW|1|5|C|276
1VWW|1|5|G|277
1VWW|1|5|G|278
1VWW|1|5|A|279
1VWW|1|5|G|280
1VWW|1|5|U|281
1VWW|1|5|C|282
1VWW|1|5|G|283
*
1VWW|1|5|C|304
1VWW|1|5|A|305
1VWW|1|5|A|306
1VWW|1|5|A|307
1VWW|1|5|G|308
1VWW|1|5|C|309
1VWW|1|5|G|310
*
1VWW|1|5|U|327
1VWW|1|5|A|328
1VWW|1|5|A|329
1VWW|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains