J5_1VWW_002

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAGGAGUC*GGAC*GUUCC*GGCCGCUGC*GCAGGUGCAGAUCUU

Length

41 nucleotides

Bulged bases

1VWW|1|5|C|2289, 1VWW|1|5|G|2343, 1VWW|1|5|U|2350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|A|1333
1VWW|1|5|A|1334
1VWW|1|5|G|1335
1VWW|1|5|G|1336
1VWW|1|5|A|1337
1VWW|1|5|G|1338
1VWW|1|5|U|1339
1VWW|1|5|C|1340
*
1VWW|1|5|G|1516
1VWW|1|5|G|1517
1VWW|1|5|A|1518
1VWW|1|5|C|1519
*
1VWW|1|5|G|1658
1VWW|1|5|U|1659
1VWW|1|5|U|1660
1VWW|1|5|C|1661
1VWW|1|5|C|1662
*
1VWW|1|5|G|2287
1VWW|1|5|G|2288
1VWW|1|5|C|2289
1VWW|1|5|C|2290
1VWW|1|5|G|2291
1VWW|1|5|C|2292
1VWW|1|5|U|2293
1VWW|1|5|G|2294
1VWW|1|5|C|2295
*
1VWW|1|5|G|2339
1VWW|1|5|C|2340
1VWW|1|5|A|2341
1VWW|1|5|G|2342
1VWW|1|5|G|2343
1VWW|1|5|U|2344
1VWW|1|5|G|2345
1VWW|1|5|C|2346
1VWW|1|5|A|2347
1VWW|1|5|G|2348
1VWW|1|5|A|2349
1VWW|1|5|U|2350
1VWW|1|5|C|2351
1VWW|1|5|U|2352
1VWW|1|5|U|2353

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA