J5_1VWW_003

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAG*CGCAAUGAAGGUGAAG*CGAG*CGGCC*GAGCACGAG

Length

38 nucleotides

Bulged bases

1VWW|1|5|A|1387, 1VWW|1|5|A|1497, 1VWW|1|5|C|1501, 1VWW|1|5|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|C|1352
1VWW|1|5|G|1353
1VWW|1|5|A|1354
1VWW|1|5|G|1355
*
1VWW|1|5|C|1384
1VWW|1|5|G|1385
1VWW|1|5|C|1386
1VWW|1|5|A|1387
1VWW|1|5|A|1388
1VWW|1|5|U|1389
1VWW|1|5|G|1390
1VWW|1|5|A|1391
1VWW|1|5|A|1392
1VWW|1|5|G|1393
1VWW|1|5|G|1394
1VWW|1|5|U|1395
1VWW|1|5|G|1396
1VWW|1|5|A|1397
1VWW|1|5|A|1398
1VWW|1|5|G|1399
*
1VWW|1|5|C|1418
1VWW|1|5|G|1419
1VWW|1|5|A|1420
1VWW|1|5|G|1421
*
1VWW|1|5|C|1464
1VWW|1|5|G|1465
1VWW|1|5|G|1466
1VWW|1|5|C|1467
1VWW|1|5|C|1468
*
1VWW|1|5|G|1496
1VWW|1|5|A|1497
1VWW|1|5|G|1498
1VWW|1|5|C|1499
1VWW|1|5|A|1500
1VWW|1|5|C|1501
1VWW|1|5|G|1502
1VWW|1|5|A|1503
1VWW|1|5|G|1504

Current chains

Chain 5

28S ribosomal RNA

Nearby chains