J5_1VWW_004

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAAGCCGG*UGGCU*AACUG*CGGACCAGG*CAC

Length

31 nucleotides

Bulged bases

1VWW|1|5|G|3620, 1VWW|1|5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|2855
1VWW|1|5|C|2856
1VWW|1|5|A|2857
1VWW|1|5|A|2858
1VWW|1|5|G|2859
1VWW|1|5|C|2860
1VWW|1|5|C|2861
1VWW|1|5|G|2862
1VWW|1|5|G|2863
*
1VWW|1|5|U|2887
1VWW|1|5|G|2888
1VWW|1|5|G|2889
1VWW|1|5|C|2890
1VWW|1|5|U|2891
*
1VWW|1|5|A|3610
1VWW|1|5|A|3611
1VWW|1|5|C|3612
1VWW|1|5|U|3613
1VWW|1|5|G|3614
*
1VWW|1|5|C|3618
1VWW|1|5|G|3619
1VWW|1|5|G|3620
1VWW|1|5|A|3621
1VWW|1|5|C|3622
1VWW|1|5|C|3623
1VWW|1|5|A|3624
1VWW|1|5|G|3625
1VWW|1|5|G|3626
*
1VWW|1|5|C|3835
1VWW|1|5|A|3836
1VWW|1|5|C|3837

Current chains

Chain 5

28S ribosomal RNA

Nearby chains