J5_1VWW_005
3D structure
- PDB id
- 1VWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGAAGACCC*GGGAUAACUGGCUUGUGGC*GCUUUUUGAUCCUUCGAUGUC*GGUUUAGAC*GUUAGUUU
- Length
- 66 nucleotides
- Bulged bases
- 1VWW|1|5|A|3908, 1VWW|1|5|A|4394, 1VWW|1|5|U|4436, 1VWW|1|5|U|4437, 1VWW|1|5|U|4450, 1VWW|1|5|G|4451, 1VWW|1|5|U|4452, 1VWW|1|5|U|4531, 1VWW|1|5|U|4555, 1VWW|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VWW|1|5|A|3903
1VWW|1|5|G|3904
1VWW|1|5|A|3905
1VWW|1|5|A|3906
1VWW|1|5|G|3907
1VWW|1|5|A|3908
1VWW|1|5|C|3909
1VWW|1|5|C|3910
1VWW|1|5|C|3911
*
1VWW|1|5|G|4391
1VWW|1|5|G|4392
1VWW|1|5|G|4393
1VWW|1|5|A|4394
1VWW|1|5|U|4395
1VWW|1|5|A|4396
1VWW|1|5|A|4397
1VWW|1|5|C|4398
1VWW|1|5|U|4399
1VWW|1|5|G|4400
1VWW|1|5|G|4401
1VWW|1|5|C|4402
1VWW|1|5|U|4403
1VWW|1|5|U|4404
1VWW|1|5|G|4405
1VWW|1|5|U|4406
1VWW|1|5|G|4407
1VWW|1|5|G|4408
1VWW|1|5|C|4409
*
1VWW|1|5|G|4433
1VWW|1|5|C|4434
1VWW|1|5|U|4435
1VWW|1|5|U|4436
1VWW|1|5|U|4437
1VWW|1|5|U|4438
1VWW|1|5|U|4439
1VWW|1|5|G|4440
1VWW|1|5|A|4441
1VWW|1|5|U|4442
1VWW|1|5|C|4443
1VWW|1|5|C|4444
1VWW|1|5|U|4445
1VWW|1|5|U|4446
1VWW|1|5|C|4447
1VWW|1|5|G|4448
1VWW|1|5|A|4449
1VWW|1|5|U|4450
1VWW|1|5|G|4451
1VWW|1|5|U|4452
1VWW|1|5|C|4453
*
1VWW|1|5|G|4528
1VWW|1|5|G|4529
1VWW|1|5|U|4530
1VWW|1|5|U|4531
1VWW|1|5|U|4532
1VWW|1|5|A|4533
1VWW|1|5|G|4534
1VWW|1|5|A|4535
1VWW|1|5|C|4536
*
1VWW|1|5|G|4550
1VWW|1|5|U|4551
1VWW|1|5|U|4552
1VWW|1|5|A|4553
1VWW|1|5|G|4554
1VWW|1|5|U|4555
1VWW|1|5|U|4556
1VWW|1|5|U|4557
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
Coloring options: