J5_1VWW_006

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAAGACCC*GGGAUAACUGGCUUGUG*UUUUUGAUCCUUCGAUGUC*GGUUUAG*UAGUUU

Length

58 nucleotides

Bulged bases

1VWW|1|5|A|3908, 1VWW|1|5|A|4394, 1VWW|1|5|U|4436, 1VWW|1|5|U|4437, 1VWW|1|5|U|4450, 1VWW|1|5|G|4451, 1VWW|1|5|U|4452, 1VWW|1|5|U|4531, 1VWW|1|5|U|4555, 1VWW|1|5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|A|3903
1VWW|1|5|G|3904
1VWW|1|5|A|3905
1VWW|1|5|A|3906
1VWW|1|5|G|3907
1VWW|1|5|A|3908
1VWW|1|5|C|3909
1VWW|1|5|C|3910
1VWW|1|5|C|3911
*
1VWW|1|5|G|4391
1VWW|1|5|G|4392
1VWW|1|5|G|4393
1VWW|1|5|A|4394
1VWW|1|5|U|4395
1VWW|1|5|A|4396
1VWW|1|5|A|4397
1VWW|1|5|C|4398
1VWW|1|5|U|4399
1VWW|1|5|G|4400
1VWW|1|5|G|4401
1VWW|1|5|C|4402
1VWW|1|5|U|4403
1VWW|1|5|U|4404
1VWW|1|5|G|4405
1VWW|1|5|U|4406
1VWW|1|5|G|4407
*
1VWW|1|5|U|4435
1VWW|1|5|U|4436
1VWW|1|5|U|4437
1VWW|1|5|U|4438
1VWW|1|5|U|4439
1VWW|1|5|G|4440
1VWW|1|5|A|4441
1VWW|1|5|U|4442
1VWW|1|5|C|4443
1VWW|1|5|C|4444
1VWW|1|5|U|4445
1VWW|1|5|U|4446
1VWW|1|5|C|4447
1VWW|1|5|G|4448
1VWW|1|5|A|4449
1VWW|1|5|U|4450
1VWW|1|5|G|4451
1VWW|1|5|U|4452
1VWW|1|5|C|4453
*
1VWW|1|5|G|4528
1VWW|1|5|G|4529
1VWW|1|5|U|4530
1VWW|1|5|U|4531
1VWW|1|5|U|4532
1VWW|1|5|A|4533
1VWW|1|5|G|4534
*
1VWW|1|5|U|4552
1VWW|1|5|A|4553
1VWW|1|5|G|4554
1VWW|1|5|U|4555
1VWW|1|5|U|4556
1VWW|1|5|U|4557

Current chains

Chain 5

28S ribosomal RNA

Nearby chains