J5_1VX2_001

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAUU*AAUAG

Length

37 nucleotides

Bulged bases

1VX2|1|2|A|590, 1VX2|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|30
1VX2|1|2|U|31
1VX2|1|2|U|32
1VX2|1|2|G|33
1VX2|1|2|U|34
*
1VX2|1|2|A|521
1VX2|1|2|A|522
1VX2|1|2|A|523
1VX2|1|2|U|524
1VX2|1|2|A|525
1VX2|1|2|A|526
1VX2|1|2|C|527
*
1VX2|1|2|G|558
1VX2|1|2|G|559
1VX2|1|2|A|560
1VX2|1|2|A|561
1VX2|1|2|U|562
1VX2|1|2|G|563
1VX2|1|2|A|564
1VX2|1|2|G|565
*
1VX2|1|2|C|585
1VX2|1|2|G|586
1VX2|1|2|A|587
1VX2|1|2|G|588
1VX2|1|2|G|589
1VX2|1|2|A|590
1VX2|1|2|U|591
1VX2|1|2|C|592
1VX2|1|2|C|593
1VX2|1|2|A|594
1VX2|1|2|U|595
1VX2|1|2|U|596
*
1VX2|1|2|A|640
1VX2|1|2|A|641
1VX2|1|2|U|642
1VX2|1|2|A|643
1VX2|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain X

Ribosomal protein uS12

Chain e

Ribosomal protein eS30