J5_1VX2_002

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUGCAUG*CGAAUGGC*GAG*CACAUC*GAAGGCAGCAG

Length

36 nucleotides

Bulged bases

1VX2|1|2|U|55, 1VX2|1|2|A|92

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|49
1VX2|1|2|A|50
1VX2|1|2|U|51
1VX2|1|2|G|52
1VX2|1|2|C|53
1VX2|1|2|A|54
1VX2|1|2|U|55
1VX2|1|2|G|56
*
1VX2|1|2|C|89
1VX2|1|2|G|90
1VX2|1|2|A|91
1VX2|1|2|A|92
1VX2|1|2|U|93
1VX2|1|2|G|94
1VX2|1|2|G|95
1VX2|1|2|C|96
*
1VX2|1|2|G|434
1VX2|1|2|A|435
1VX2|1|2|G|436
*
1VX2|1|2|C|457
1VX2|1|2|A|458
1VX2|1|2|C|459
1VX2|1|2|A|460
1VX2|1|2|U|461
1VX2|1|2|C|462
*
1VX2|1|2|G|467
1VX2|1|2|A|468
1VX2|1|2|A|469
1VX2|1|2|G|470
1VX2|1|2|G|471
1VX2|1|2|C|472
1VX2|1|2|A|473
1VX2|1|2|G|474
1VX2|1|2|C|475
1VX2|1|2|A|476
1VX2|1|2|G|477

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain I

Ribosomal protein eS8

Chain J

Ribosomal protein uS4

Chain Y

Ribosomal protein eS24