J5_1VX2_003

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUGGAUAAC*GCUAAUACAUGCCGACGGGCGCUGAC*GGAUGCGUGCAUUUAU*AUAACCUCGGGCCGAU*ACGACC

Length

93 nucleotides

Bulged bases

1VX2|1|2|U|128, 1VX2|1|2|C|129, 1VX2|1|2|G|130, 1VX2|1|2|C|131, 1VX2|1|2|U|132, 1VX2|1|2|C|133, 1VX2|1|2|C|134, 1VX2|1|2|U|135, 1VX2|1|2|C|136, 1VX2|1|2|U|137, 1VX2|1|2|C|138, 1VX2|1|2|C|139, 1VX2|1|2|C|142, 1VX2|1|2|U|172, 1VX2|1|2|G|183, 1VX2|1|2|G|215, 1VX2|1|2|U|305, 1VX2|1|2|C|306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|G|123
1VX2|1|2|U|124
1VX2|1|2|C|125
1VX2|1|2|G|126
1VX2|1|2|C|127
1VX2|1|2|U|128
1VX2|1|2|C|129
1VX2|1|2|G|130
1VX2|1|2|C|131
1VX2|1|2|U|132
1VX2|1|2|C|133
1VX2|1|2|C|134
1VX2|1|2|U|135
1VX2|1|2|C|136
1VX2|1|2|U|137
1VX2|1|2|C|138
1VX2|1|2|C|139
1VX2|1|2|C|140
1VX2|1|2|A|141
1VX2|1|2|C|142
1VX2|1|2|U|143
1VX2|1|2|U|144
1VX2|1|2|G|145
1VX2|1|2|G|146
1VX2|1|2|A|147
1VX2|1|2|U|148
1VX2|1|2|A|149
1VX2|1|2|A|150
1VX2|1|2|C|151
*
1VX2|1|2|G|167
1VX2|1|2|C|168
1VX2|1|2|U|169
1VX2|1|2|A|170
1VX2|1|2|A|171
1VX2|1|2|U|172
1VX2|1|2|A|173
1VX2|1|2|C|174
1VX2|1|2|A|175
1VX2|1|2|U|176
1VX2|1|2|G|177
1VX2|1|2|C|178
1VX2|1|2|C|179
1VX2|1|2|G|180
1VX2|1|2|A|181
1VX2|1|2|C|182
1VX2|1|2|G|183
1VX2|1|2|G|184
1VX2|1|2|G|185
1VX2|1|2|C|186
1VX2|1|2|G|187
1VX2|1|2|C|188
1VX2|1|2|U|189
1VX2|1|2|G|190
1VX2|1|2|A|191
1VX2|1|2|C|192
*
1VX2|1|2|G|207
1VX2|1|2|G|208
1VX2|1|2|A|209
1VX2|1|2|U|210
1VX2|1|2|G|211
1VX2|1|2|C|212
1VX2|1|2|G|213
1VX2|1|2|U|214
1VX2|1|2|G|215
1VX2|1|2|C|216
1VX2|1|2|A|217
1VX2|1|2|U|218
1VX2|1|2|U|219
1VX2|1|2|U|220
1VX2|1|2|A|221
1VX2|1|2|U|222
*
1VX2|1|2|A|299
1VX2|1|2|U|300
1VX2|1|2|A|301
1VX2|1|2|A|302
1VX2|1|2|C|303
1VX2|1|2|C|304
1VX2|1|2|U|305
1VX2|1|2|C|306
1VX2|1|2|G|307
1VX2|1|2|G|308
1VX2|1|2|G|309
1VX2|1|2|C|310
1VX2|1|2|C|311
1VX2|1|2|G|312
1VX2|1|2|A|313
1VX2|1|2|U|314
*
1VX2|1|2|A|336
1VX2|1|2|C|337
1VX2|1|2|G|338
1VX2|1|2|A|339
1VX2|1|2|C|340
1VX2|1|2|C|341

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17

Chain Y

Ribosomal protein eS24