J5_1VX2_004

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUCUUGGGAGCG*CCCGCCG*CAUU*AUGGAAUAG*CAUGAU

Length

38 nucleotides

Bulged bases

1VX2|1|2|C|687, 1VX2|1|2|A|869, 1VX2|1|2|U|871, 1VX2|1|2|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|A|685
1VX2|1|2|U|686
1VX2|1|2|C|687
1VX2|1|2|U|688
1VX2|1|2|U|689
1VX2|1|2|G|690
1VX2|1|2|G|691
1VX2|1|2|G|692
1VX2|1|2|A|693
1VX2|1|2|G|694
1VX2|1|2|C|695
1VX2|1|2|G|696
*
1VX2|1|2|C|734
1VX2|1|2|C|735
1VX2|1|2|C|736
1VX2|1|2|G|737
1VX2|1|2|C|738
1VX2|1|2|C|739
1VX2|1|2|G|744
*
1VX2|1|2|C|797
1VX2|1|2|A|798
1VX2|1|2|U|799
1VX2|1|2|U|800
*
1VX2|1|2|A|865
1VX2|1|2|U|866
1VX2|1|2|G|867
1VX2|1|2|G|868
1VX2|1|2|A|869
1VX2|1|2|A|870
1VX2|1|2|U|871
1VX2|1|2|A|872
1VX2|1|2|G|873
*
1VX2|1|2|C|912
1VX2|1|2|A|913
1VX2|1|2|U|914
1VX2|1|2|G|915
1VX2|1|2|A|916
1VX2|1|2|U|917

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein eS7

Chain L

Ribosomal protein uS17

Chain N

Ribosomal protein uS15

Chain W

Ribosomal protein uS8

Chain X

Ribosomal protein uS12