J5_1VX6_003

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAAUAG*UG*UG*CGGACAAGG*CAC

Length

25 nucleotides

Bulged bases

1VX6|1|A|G|2409, 1VX6|1|A|G|2414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|G|2174
1VX6|1|A|C|2175
1VX6|1|A|A|2176
1VX6|1|A|A|2177
1VX6|1|A|A|2178
1VX6|1|A|A|2179
1VX6|1|A|U|2180
1VX6|1|A|A|2181
1VX6|1|A|G|2182
*
1VX6|1|A|U|2206
1VX6|1|A|G|2207
*
1VX6|1|A|U|2402
1VX6|1|A|G|2403
*
1VX6|1|A|C|2407
1VX6|1|A|G|2408
1VX6|1|A|G|2409
1VX6|1|A|A|2410
1VX6|1|A|C|2411
1VX6|1|A|A|2412
1VX6|1|A|A|2413
1VX6|1|A|G|2414
1VX6|1|A|G|2415
*
1VX6|1|A|C|2624
1VX6|1|A|A|2625
1VX6|1|A|C|2626

Current chains

Chain A

28S ribosomal RNA

Nearby chains