J5_1VX6_004

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

1VX6|1|A|A|2697, 1VX6|1|A|A|3176, 1VX6|1|A|U|3337, 1VX6|1|A|U|3338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|A|2692
1VX6|1|A|G|2693
1VX6|1|A|A|2694
1VX6|1|A|A|2695
1VX6|1|A|G|2696
1VX6|1|A|A|2697
1VX6|1|A|C|2698
1VX6|1|A|C|2699
*
1VX6|1|A|G|3174
1VX6|1|A|G|3175
1VX6|1|A|A|3176
1VX6|1|A|U|3177
1VX6|1|A|A|3178
1VX6|1|A|A|3179
1VX6|1|A|C|3180
1VX6|1|A|U|3181
1VX6|1|A|G|3182
*
1VX6|1|A|C|3226
1VX6|1|A|U|3227
1VX6|1|A|U|3228
1VX6|1|A|C|3229
1VX6|1|A|G|3230
1VX6|1|A|A|3231
1VX6|1|A|U|3232
1VX6|1|A|G|3233
1VX6|1|A|U|3234
1VX6|1|A|C|3235
*
1VX6|1|A|G|3310
1VX6|1|A|G|3311
1VX6|1|A|U|3312
1VX6|1|A|U|3313
1VX6|1|A|U|3314
1VX6|1|A|A|3315
1VX6|1|A|G|3316
*
1VX6|1|A|U|3334
1VX6|1|A|A|3335
1VX6|1|A|G|3336
1VX6|1|A|U|3337
1VX6|1|A|U|3338
1VX6|1|A|U|3339

Current chains

Chain A

28S ribosomal RNA

Nearby chains