J5_1VY6_002
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 1VY6|1|AA|A|109, 1VY6|1|AA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VY6_002 not in the Motif Atlas
- Homologous match to J5_6CZR_021
- Geometric discrepancy: 0.0781
- The information below is about J5_6CZR_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.5
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
1VY6|1|AA|C|58
1VY6|1|AA|A|59
1VY6|1|AA|A|60
1VY6|1|AA|G|61
*
1VY6|1|AA|C|106
1VY6|1|AA|G|107
1VY6|1|AA|G|108
1VY6|1|AA|A|109
1VY6|1|AA|C|110
1VY6|1|AA|G|111
1VY6|1|AA|G|112
1VY6|1|AA|G|113
*
1VY6|1|AA|C|314
1VY6|1|AA|A|315
1VY6|1|AA|G|316
*
1VY6|1|AA|C|337
1VY6|1|AA|A|338
1VY6|1|AA|C|339
*
1VY6|1|AA|G|350
1VY6|1|AA|G|351
1VY6|1|AA|C|352
1VY6|1|AA|A|353
1VY6|1|AA|G|354
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AP
- 30S ribosomal protein S16
- Chain AT
- 30S ribosomal protein S20
- Chain BO
- 50S ribosomal protein L14
- Chain BT
- 50S ribosomal protein L19
Coloring options: