J5_1VY7_004

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

1VY7|1|BA|U|272|||A, 1VY7|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY7|1|BA|C|268
1VY7|1|BA|U|269
1VY7|1|BA|A|270
1VY7|1|BA|A|271
1VY7|1|BA|A|271|||A
1VY7|1|BA|C|271|||B
*
1VY7|1|BA|G|271|||V
1VY7|1|BA|G|271|||W
1VY7|1|BA|G|271|||X
1VY7|1|BA|U|271|||Y
1VY7|1|BA|C|271|||Z
1VY7|1|BA|G|272
1VY7|1|BA|U|272|||A
1VY7|1|BA|G|272|||B
*
1VY7|1|BA|C|366
1VY7|1|BA|G|370
1VY7|1|BA|A|371
1VY7|1|BA|G|372
1VY7|1|BA|U|373
1VY7|1|BA|A|374
1VY7|1|BA|C|375
*
1VY7|1|BA|G|399
1VY7|1|BA|G|400
1VY7|1|BA|A|401
1VY7|1|BA|A|402
1VY7|1|BA|U|403
1VY7|1|BA|C|404
1VY7|1|BA|U|405
1VY7|1|BA|G|406
*
1VY7|1|BA|U|421
1VY7|1|BA|A|422
1VY7|1|BA|A|423
1VY7|1|BA|G|424

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BI

50S ribosomal protein L9