J5_1W2B_005
3D structure
- PDB id
- 1W2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Trigger Factor ribosome binding domain in complex with 50S
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAG*CACAG*CGACAUG*CGC*GGGAG
- Length
- 24 nucleotides
- Bulged bases
- 1W2B|1|0|A|700, 1W2B|1|0|G|745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1W2B_005 not in the Motif Atlas
- Homologous match to J5_4V9F_005
- Geometric discrepancy: 0.0525
- The information below is about J5_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63867.1
- Basepair signature
- cWW-F-F-F-F-cWW-cHW-cWW-F-F-cWW-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
1W2B|1|0|C|658
1W2B|1|0|A|659
1W2B|1|0|A|660
1W2B|1|0|G|661
*
1W2B|1|0|C|685
1W2B|1|0|A|686
1W2B|1|0|C|687
1W2B|1|0|A|688
1W2B|1|0|G|689
*
1W2B|1|0|C|696
1W2B|1|0|G|697
1W2B|1|0|A|698
1W2B|1|0|C|699
1W2B|1|0|A|700
1W2B|1|0|U|701
1W2B|1|0|G|702
*
1W2B|1|0|C|726
1W2B|1|0|G|727
1W2B|1|0|C|728
*
1W2B|1|0|G|743
1W2B|1|0|G|744
1W2B|1|0|G|745
1W2B|1|0|A|746
1W2B|1|0|G|747
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain C
- 50S RIBOSOMAL PROTEIN L4P
- Chain K
- 50S RIBOSOMAL PROTEIN L15P
- Chain N
- 50S RIBOSOMAL PROTEIN L18E
Coloring options: