J5_1W2B_006

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1W2B|1|0|G|1814, 1W2B|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1W2B_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0611

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

1W2B|1|0|G|1752
1W2B|1|0|C|1753
1W2B|1|0|A|1754
1W2B|1|0|A|1755
1W2B|1|0|G|1756
1W2B|1|0|U|1757
1W2B|1|0|U|1758
1W2B|1|0|A|1759
1W2B|1|0|G|1760
*
1W2B|1|0|U|1784
1W2B|1|0|G|1785
*
1W2B|1|0|U|1807
1W2B|1|0|C|1808
*
1W2B|1|0|G|1812
1W2B|1|0|U|1813
1W2B|1|0|G|1814
1W2B|1|0|A|1815
1W2B|1|0|C|1816
1W2B|1|0|U|1817
1W2B|1|0|C|1818
1W2B|1|0|G|1819
1W2B|1|0|G|1820
*
1W2B|1|0|C|2029
1W2B|1|0|A|2030
1W2B|1|0|C|2031

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain J

50S RIBOSOMAL PROTEIN L14P

Chain O

50S RIBOSOMAL PROTEIN L19E