J5_1XNQ_002

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

1XNQ|1|A|A|109, 1XNQ|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1XNQ_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0484

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1XNQ|1|A|C|58
1XNQ|1|A|A|59
1XNQ|1|A|A|60
1XNQ|1|A|G|61
*
1XNQ|1|A|C|106
1XNQ|1|A|G|107
1XNQ|1|A|G|108
1XNQ|1|A|A|109
1XNQ|1|A|C|110
1XNQ|1|A|G|111
1XNQ|1|A|G|112
1XNQ|1|A|G|113
*
1XNQ|1|A|C|314
1XNQ|1|A|A|315
1XNQ|1|A|G|316
*
1XNQ|1|A|C|337
1XNQ|1|A|A|338
1XNQ|1|A|C|339
*
1XNQ|1|A|G|350
1XNQ|1|A|G|351
1XNQ|1|A|C|352
1XNQ|1|A|A|353
1XNQ|1|A|G|354

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein S16

Chain T

Ribosomal protein S20