3D structure

PDB id
1XNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
1XNQ|1|A|A|109, 1XNQ|1|A|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_1XNQ_002 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.0484
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

1XNQ|1|A|C|58
1XNQ|1|A|A|59
1XNQ|1|A|A|60
1XNQ|1|A|G|61
*
1XNQ|1|A|C|106
1XNQ|1|A|G|107
1XNQ|1|A|G|108
1XNQ|1|A|A|109
1XNQ|1|A|C|110
1XNQ|1|A|G|111
1XNQ|1|A|G|112
1XNQ|1|A|G|113
*
1XNQ|1|A|C|314
1XNQ|1|A|A|315
1XNQ|1|A|G|316
*
1XNQ|1|A|C|337
1XNQ|1|A|A|338
1XNQ|1|A|C|339
*
1XNQ|1|A|G|350
1XNQ|1|A|G|351
1XNQ|1|A|C|352
1XNQ|1|A|A|353
1XNQ|1|A|G|354

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain P
Ribosomal protein S16
Chain T
Ribosomal protein S20

Coloring options:


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