J5_1XNR_002

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

1XNR|1|A|A|109, 1XNR|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1XNR_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0478

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1XNR|1|A|C|58
1XNR|1|A|A|59
1XNR|1|A|A|60
1XNR|1|A|G|61
*
1XNR|1|A|C|106
1XNR|1|A|G|107
1XNR|1|A|G|108
1XNR|1|A|A|109
1XNR|1|A|C|110
1XNR|1|A|G|111
1XNR|1|A|G|112
1XNR|1|A|G|113
*
1XNR|1|A|C|314
1XNR|1|A|A|315
1XNR|1|A|G|316
*
1XNR|1|A|C|337
1XNR|1|A|A|338
1XNR|1|A|C|339
*
1XNR|1|A|G|350
1XNR|1|A|G|351
1XNR|1|A|C|352
1XNR|1|A|A|353
1XNR|1|A|G|354

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain P

16S Ribosomal protein S16

Chain T

16S Ribosomal protein S20