J5_1Y69_001

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AUG

Length

22 nucleotides

Bulged bases

1Y69|1|0|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1Y69_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.2509

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1Y69|1|0|C|46
1Y69|1|0|G|47
1Y69|1|0|A|48
1Y69|1|0|U|49
1Y69|1|0|G|50
1Y69|1|0|A|51
1Y69|1|0|A|52
1Y69|1|0|G|53
*
1Y69|1|0|C|114
1Y69|1|0|G|115
1Y69|1|0|A|116
1Y69|1|0|A|117
1Y69|1|0|U|118
1Y69|1|0|G|119
*
1Y69|1|0|C|128
1Y69|1|0|A|129
*
1Y69|1|0|U|142
1Y69|1|0|A|143
1Y69|1|0|U|144
*
1Y69|1|0|A|153
1Y69|1|0|U|154
1Y69|1|0|G|155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains