J5_1YHQ_006

3D structure

PDB id

1YHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1YHQ|1|0|G|1814, 1YHQ|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1YHQ_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0266

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

1YHQ|1|0|G|1752
1YHQ|1|0|C|1753
1YHQ|1|0|A|1754
1YHQ|1|0|A|1755
1YHQ|1|0|G|1756
1YHQ|1|0|U|1757
1YHQ|1|0|U|1758
1YHQ|1|0|A|1759
1YHQ|1|0|G|1760
*
1YHQ|1|0|U|1784
1YHQ|1|0|G|1785
*
1YHQ|1|0|U|1807
1YHQ|1|0|C|1808
*
1YHQ|1|0|G|1812
1YHQ|1|0|U|1813
1YHQ|1|0|G|1814
1YHQ|1|0|A|1815
1YHQ|1|0|C|1816
1YHQ|1|0|U|1817
1YHQ|1|0|C|1818
1YHQ|1|0|G|1819
1YHQ|1|0|G|1820
*
1YHQ|1|0|C|2029
1YHQ|1|0|A|2030
1YHQ|1|0|C|2031

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19E